Principal Investigator: Dr Ian Sayers
Department: Respiratory Medicine
Institution: University of NottinghamTags: 8389, asthma, GWAS, Idiopathic Pulmonary Fibrosis, severe
1a: This study aims to use Genome Wide Association (GWA) to investigate the genetic basis of severe asthma and Idiopathic Pulmonary Fibrosis (IPF) using patients we recruited from the UK. The approach is to see if genetic changes are found in patients more or less frequently than in people without disease. Both analyses require non-disease control data available in UK Biobank.
i) *To identify genetic variants associated with severe asthma.
ii) To identify genetic variants associated with IPF.
*UK Biobank have kindly made data enabling recruitment of mild and severe asthma patients from UK Biobank extending the preliminary application.
1b: A key aim of UK Biobank is “improving the prevention, diagnosis and treatment of a wide range of serious and life-threatening illnesses”. By further defining the genetic basis of asthma and IPF in the proposed study there is potential to gain novel insight into disease mechanisms with scope to contribute to each of these specific aims, e.g. early diagnosis and identification of new therapeutic targets.
1c: We (lead Ian Sayers) have recruited 2,857 severe asthma and 750 IPF (lead Gisli Jenkins) patients from the UK and are measuring 825,928 genetic changes. Using UK Biobank we will identify subjects without asthma, IPF or other respiratory disease that have these same data. This will enable us to use statistics to identify disease associated genetic variation. We also aim to identify mild and severe asthma subjects from UK Biobank in order to i) compare our severe subjects to UK Biobank mild asthma subjects and ii) provide a replication cohort for the severe asthma-control analyses.
1d: We request access to genotyping data from the entire cohort (anticipated late 2015). To initiate the project we have requested access to available genetic data now (150,000) meeting control, mild or severe asthma definition. We envisage; 105,000/150,000 subjects will meet control criteria. This number will decrease when selected for normal lung function but will provide adequate control subjects (case 1:4 control subjects). We envisage ~18,000/150,000 subjects will have asthma, 1,800 with severe disease. Access to the entire dataset will facilitate identification of additional asthma cases for the replication phase.
We currently have applications 648 and 8389 approved and both relate to lung health and disease. Application 648 is the original UK BiLEVE application and 8389 was for analyses of asthma and idiopathic pulmonary fibrosis (IPF) (application led by Ian Sayers at Nottingham) – for both applications, the genetic analyses are being run by our group here in Leicester using two distinct copies of the genotype and phenotype data. As part of our ongoing research aims to understand the genetic basis of lung health and disease, we would like to be able to directly compare the genetic associations with lung function and COPD (648) and IPF and asthma (8389). This requires us to compare results from analyses of independent sets of individuals. Although the final association results relating to both applications will be made publicly available at the time of completion, the two applications currently have different ids and we know that the UK Biobank individuals contributing to the 648 and 8389 analyses are overlapping which precludes us from being able to use those final results in their present form.
Project extension February 2019:
We have completed the initial case control analyses but would like to extend the duration and scope of the study to complete additional analyses.
More specifically, we would like to;
Investigate association between the moderate-severe asthma signals we have identified in our GWAS and clinical and immunological features of asthma in UKB.
Select new controls for an enlarged study of IPF susceptibility that combines the previously published dataset with new IPF cases.
Last updated Mar 12, 2019