Last updated:
ID:
33127
Start date:
23 April 2018
Project status:
Current
Principal investigator:
Dr Sriram Sankararaman
Lead institution:
University of California, Los Angeles, United States of America

The goal of the proposed work is to develop computational and statistical methods for analyzing large-scale genetic and phenotypic data. These methods include fast methods for computing genetic structure and ancestry, for associating genetic variants with phenotypes, risk prediction, testing associations and for imputing genotype and phenotype. The UK Biobank data will be used to develop and benchmark these methods. The proposed methods will lead to better understanding of the genetic basis of diseases and will lead to improved methods for prediction and treatment. We plan to use the rich UK Biobank data to develop scalable methods for analyzing genetic data and for finding genetic variants associated with phenotype. We would like access to the full cohort (genetic and phenotypic data).

Related publications

Author(s)
Alec M. Chiu, Erin K. Molloy, Zilong Tan, Ameet Talwalkar, Sriram Sankararaman
Journal
American Journal of Human Genetics
Author(s)
Anthony S Findley, Alan Monziani, Allison L Richards, Katherine Rhodes, Michelle C Ward, Cynthia A Kalita, Adnan Alazizi, Ali Pazokitoroudi, Sriram Sankararaman, Xiaoquan Wen,…
Journal
eLife
Author(s)
Rachel Mester, Kangcheng Hou, Yi Ding, Gillian Meeks, Kathryn S Burch, Arjun Bhattacharya, Brenna M Henn, Bogdan Pasaniuc
Journal
American Journal of Human Genetics
Author(s)
Nathan LaPierre, Boyang Fu, Steven Turnbull, Eleazar Eskin, Sriram Sankararaman
Journal
Genome Research
Author(s)
Xinzhu Wei, Christopher R Robles, Ali Pazokitoroudi, Andrea Ganna, Alexander Gusev, Arun Durvasula, Steven Gazal, Po-Ru Loh, David Reich, Sriram Sankararaman
Journal
eLife
Author(s)
Ulzee An, Ali Pazokitoroudi, Marcus Alvarez, Lianyun Huang, Silviu Bacanu, Andrew J. Schork, Kenneth Kendler, Päivi Pajukanta, Jonathan Flint, Noah Zaitlen, Na Cai, Andy…
Journal
Nature Genetics
Author(s)
Ali Pazokitoroudi, Yue Wu, Kathryn S. Burch, Kangcheng Hou, Aaron Zhou, Bogdan Pasaniuc, Sriram Sankararaman
Journal
Nature Communications
Author(s)
Arunabha Majumdar, Bogdan Pasaniuc
Journal
Statistics in Medicine
Author(s)
Boyang Fu, Ali Pazokitoroudi, Mukund Sudarshan, Zhengtong Liu, Lakshminarayanan Subramanian, Sriram Sankararaman
Journal
Nature Communications
Author(s)
Richard Border, Georgios Athanasiadis, Alfonso Buil, Andrew J Schork, Na Cai, Alexander I Young, Thomas Werge, Jonathan Flint, Kenneth S Kendler, Sriram Sankararaman, Andy…
Journal
Science
Author(s)
Yue Wu, Kathryn S. Burch, Andrea Ganna, Päivi Pajukanta, Bogdan Pasaniuc, Sriram Sankararaman
Journal
American Journal of Human Genetics
Author(s)
Boyang Fu, Prateek Anand, Aakarsh Anand, Joel Mefford, Sriram Sankararaman
Journal
Genome Research
Author(s)
Oren Avram, Berkin Durmus, Nadav Rakocz, Giulia Corradetti, Ulzee An, Muneeswar G. Nittala, Prerit Terway, Akos Rudas, Zeyuan Johnson Chen, Yu Wakatsuki, Kazutaka Hirabayashi,…
Journal
Nature Biomedical Engineering
Author(s)
Moonseong Jeong, Ali Pazokitoroudi, Zhengtong Liu, Sriram Sankararaman
Journal
Genome Research
Author(s)
Michal Sadowski, Mike Thompson, Joel Mefford, Tanushree Haldar, Akinyemi Oni-Orisan, Richard Border, Ali Pazokitoroudi, Na Cai, Julien F. Ayroles, Sriram Sankararaman, Andy W. Dahl,…
Journal
Cell Genomics
Author(s)
Angela Wei, Richard Border, Boyang Fu, Sinéad Cullina, Nadav Brandes, Seon-Kyeong Jang, Sriram Sankararaman, Eimear E. Kenny, Miriam S. Udler, Vasilis Ntranos, Noah Zaitlen,…
Journal
Nature Communications
  • nutrition and metabolism
Author(s)
Joel Mefford, Molly Smullen, Felix Zhang, Michal Sadowski, Richard Border, Andy Dahl, Jonathan Flint, Noah Zaitlen
Journal
American Journal of Human Genetics
Author(s)
Kangcheng Hou, Kathryn S. Burch, Arunabha Majumdar, Huwenbo Shi, Nicholas Mancuso, Yue Wu, Sriram Sankararaman, Bogdan Pasaniuc
Journal
Nature Genetics
Author(s)
Ali Pazokitoroudi, Alec M. Chiu, Kathryn S. Burch, Bogdan Pasaniuc, Sriram Sankararaman
Journal
American Journal of Human Genetics
Author(s)
Aman Agrawal, Alec M. Chiu, Minh Le, Eran Halperin, Sriram Sankararaman
Journal
PLOS Genetics

All publications