Last updated:
ID:
28732
Start date:
24 April 2018
Project status:
Current
Principal investigator:
Professor Pak Chung Sham
Lead institution:
University of Hong Kong, Hong Kong

To understand the genetic contribution to common diseases and traits, it is vital to understand where in the genome are the most critical genomic variants, their nature and frequencies, and how much each locus contributes to the disease/trait. Many methods have been proposed to address these questions We aim to investigate the validity of existing methods as well as develop new ones to better our understanding. Diseases and traits to be studied include: asthma, diabetes, blood pressure, self-report cancer, anthropometric measures, cognitive abilities, allergy, education attainment, neuroticism score, depression, use of glasses, self-reported health, and hearing difficulties. Through the research we aim to better understand the contribution of common variants to common diseases and traits. For example, we aim to understand whether loci with reasonably large effect sizes exist that can be harnessed for better disease prevention or treatment. This type of information is crucial for directing future research directions as well as developing more personalized treatment and prevention strategies. Methods have been developed to partition the genome into regions and quantify the contribution each region makes to the disease/trait. These methods will be applied to the data, as well as new ones proposed by the applicants. Simulation studies will be carried out to examine the validity of the methods. If the methods are found to be robust and reliable, inferences about the contribution of each genomic locus to the disease/trait will be drawn. The full cohort.

Related publications

Author(s)
Zipeng Liu, Yiming Qin, Tian Wu, Justin D. Tubbs, Larry Baum, Timothy Shin Heng Mak, Miaoxin Li, Yan Dora Zhang, Pak Chung Sham
Journal
Nature Communications
Author(s)
Jayendra Maganbhai Bhalodiya, Arnab Palit, Gerard Giblin, Manoj Kumar Tiwari, Sanjay K Prasad, Sunil K Bhudia, Theodoros N Arvanitis, Mark A Williams
Journal
JMIR Medical Informatics
Author(s)
Zewei Xiong, Thuan-Quoc Thach, Yan Dora Zhang, Pak Chung Sham
Journal
Human Genetics and Genomics Advances
Author(s)
Justin D. Tubbs, Pak C. Sham
Journal
JAMA Psychiatry
  • drug and alcohol-related diseases
Author(s)
Yong Xiang, Yaning Feng, Jinghong Qiu, Ruoyu Zhang, Hon-Cheong So
Journal
International Journal of Infectious Diseases
  • brain
  • heart and blood vessels
  • infections
Author(s)
Yong Xiang, Ruoyu Zhang, Jinghong Qiu, Hon-Cheong So
Journal
Journal of Microbiology Immunology and Infection
  • infections
Author(s)
Yaning Feng, Kenneth Chi-Yin Wong, Wai Kai Tsui, Ruoyu Zhang, Yong Xiang, Hon-Cheong So
Journal
International Journal of Molecular Sciences
  • infections
Author(s)
Kenneth Chi-Yin Wong, Yong Xiang, Liangying Yin, Hon-Cheong So
Journal
JMIR Public Health and Surveillance
  • infections

All publications